Application of Molecular Microbiology Techniques in Bioremediation of Hydrocarbons and Other Pollutants

References (172)

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38. 38 Diversity of 16S rRNA and dioxygenase genes detected in coal-tar-contaminated site undergoing active bioremediation [DOI]
39. 39 Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10 [DOI]
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41. 41 The molecular basis for adaptive evolution in novel extradiol dioxygenases retrieved from the metagenome [DOI]
42. 42 Real-Time Polymerase Chain Reaction Quantification of the Transgenes for Roundup Ready Corn and Roundup Ready Soybean in Soil Samples [DOI]
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48. 48 Accessing uncultivated microorganisms: from the environment to organisms and genomes and back [DOI]
49. 49 Denaturing gradient gel electrophoresis characterisation of microbial communities in polycyclic aromatic hydrocarbon and polychlorinated biphenyl contaminated soil
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51. 51 DGGE/TGGE a method for identifying genes from natural ecosystems [DOI]
52. 52 Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill [DOI]
53. 53 An evaluation of terminal‐restriction fragment length polymorphism (T‐RFLP) analysis for the study of microbial community structure and dynamics [DOI]
54. 54 Multiplex polymerase chain reaction: A practical approach [DOI]
55. 55 Alkane hydroxylases involved in microbial alkane degradation [DOI]
56. 56 Assessment of Microbial Diversity in Four Southwestern United States Soils by 16S rRNA Gene Terminal Restriction Fragment Analysis [DOI]
57. 57 Microarrays for bacterial detection and microbial community analysis [DOI]
58. 58 Length-independent separation of DNA restriction fragments in two-dimensional gel electrophoresis [DOI]
59. 59 Molecular microbial ecology: land of the one-eyed king [DOI]
60. 60 Microbial Population Dynamics Associated with Crude-Oil Biodegradation in Diverse Soils [DOI]
61. 61 Microbial Activity and Community Composition during Bioremediation of Diesel-Oil-Contaminated Soil: Effects of Hydrocarbon Concentration, Fertilizers, and Incubation Time [DOI]
62. 62 Degradation of Polycyclic Aromatic Hydrocarbons at Low Temperature under Aerobic and Nitrate-Reducing Conditions in Enrichment Cultures from Northern Soils [DOI]
63. 63 Microbial phylogeny and diversity: Small subunit ribosomal RNA sequence analysis and beyond [DOI]
64. 64 Microbial Diversity of a Heavily Polluted Microbial Mat and Its Community Changes following Degradation of Petroleum Compounds [DOI]
65. 65 Monitoring of microbial hydrocarbon remediation in the soil [DOI]
66. 66 Microarray Applications in Microbial Ecology Research [DOI]
67. 67 Molecular techniques in wastewater: Understanding microbial communities, detecting pathogens, and real-time process control [DOI]
68. 68 Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds [DOI]
69. 69 Phylogenetic analysis of actinobacterial populations associated with Antarctic Dry Valley mineral soils [DOI]
70. 70 The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis [DOI]
71. 71 New Threshold and Confidence Estimates for Terminal Restriction Fragment Length Polymorphism Analysis of Complex Bacterial Communities [DOI]
72. 72 Using Real-Time PCR to Assess Changes in the Hydrocarbon-Degrading Microbial Community in Antarctic Soil During Bioremediation [DOI]
73. 73 Exploring mixed microbial community functioning: recent advances in metaproteomics [DOI]
74. 74 Metagenomics reveals diversity and abundance of meta ‐cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air‐sparging bioremediation [DOI]
75. 75 Microarray and Functional Gene Analyses of Sulfate-Reducing Prokaryotes in Low-Sulfate, Acidic Fens Reveal Cooccurrence of Recognized Genera and Novel Lineages [DOI]
76. 76 Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation [DOI]
77. 77 Isolation of Gram-positive n-alkane degraders from a hydrocarbon-contaminated Mediterranean shoreline [DOI]
78. 78 Bacterial diversity in the active stage of a bioremediation system for mineral oil hydrocarbon-contaminated soils [DOI]
79. 79 Microbial Diversity and Resistance to Copper in Metal-Contaminated Lake Sediment [DOI]
80. 80 Phylogenetic analysis of aerobic freshwater and marine enrichment cultures efficient in hydrocarbon degradation: effect of profiling method [DOI]
81. 81 Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis [DOI]
82. 82 Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR [DOI]
83. 83 Phylogenetic diversity of culturable bacteria from alpine permafrost in the Tianshan Mountains, northwestern China [DOI]
84. 84 Assessing terminal restriction fragment length polymorphism suitability for the description of bacterial community structure and dynamics in hydrocarbon‐polluted marine environments [DOI]
85. 85 Populations of heavy fuel oil-degrading marine microbial community in presence of oil sorbent materials [DOI]
86. 86 Molecular Analysis of the Bacterial Communities in Crude Oil Samples from Two Brazilian Offshore Petroleum Platforms [DOI]
87. 87 Effects of long‐term benzene pollution on bacterial diversity and community structure in groundwater [DOI]
88. 88 Structure and functional analyses of bacterial communities changes in microbial mats following petroleum exposure [DOI]
89. 89 Soil microbial communities: Influence of geographic location and hydrocarbon pollutants [DOI]
90. 90 Diversity of hydrocarbon-degradingKlebsiellastrains isolated from hydrocarbon-contaminated estuaries [DOI]
91. 91 Application of PCR–DGGE to analyse the yeast population dynamics in slurry reactors during degradation of polycyclic aromatic hydrocarbons in weathered oil [DOI]
92. 92 Evaluation of microbial diversity of different soil layers at a contaminated diesel site [DOI]
93. 93 Tolerance of Nitrobacter to toxicity of some Nigerian crude oils [DOI]
94. 94 T-RFLP analysis of bacterial communities in cyclodextrin-amended bioreactors developed for biodegradation of polychlorinated biphenyls [DOI]
95. 95 Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) and species-specific PCR for identification of Bifidobacterium species [DOI]
96. 96 Further Biogeochemical Characterization of a Trichloroethene-Contaminated Fractured Dolomite Aquifer: Electron Source and Microbial Communities Involved in Reductive Dechlorination [DOI]
97. 97 Extraction and purification of microbial DNA from petroleum‐contaminated soils and detection of low numbers of toluene, octane and pesticide degraders by multiplex polymerase chain reaction and Southern analysis [DOI]
98. 98 Plasmid mediated degradation of hydrocarbons in estuarine bacteria [DOI]
99. 99 Comparative applications of bioreactor and shake-flask systems in the laboratory treatment of oily sludge [DOI]
100. 100 Species-specific detection of hydrocarbon-utilizing bacteria [DOI]
101. 101 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA [DOI]
102. 102 Phylogenetic identification and in situ detection of individual microbial cells without cultivation [DOI]
103. 103 Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA [DOI]
104. 104 Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis [DOI]
105. 105 Automated Approach for Ribosomal Intergenic Spacer Analysis of Microbial Diversity and Its Application to Freshwater Bacterial Communities [DOI]
106. 106 Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure [DOI]
107. 107 Microbial Population Changes during Bioremediation of an Experimental Oil Spill [DOI]
108. 108 Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge [DOI]
109. 109 Opening the black box of soil microbial diversity [DOI]
110. 110 Characterization of Bacterial and Fungal Soil Communities by Automated Ribosomal Intergenic Spacer Analysis Fingerprints: Biological and Methodological Variability [DOI]
111. 111 Seasonal and Spatial Variability of Bacterial and Archaeal Assemblages in the Coastal Waters near Anvers Island, Antarctica [DOI]
112. 112 Quantitative PCR Targeting 16S rRNA and Reductive Dehalogenase Genes Simultaneously Monitors MultipleDehalococcoidesStrains [DOI]
113. 113 Characterization of Hydrocarbon-Degrading Microbial Populations in Contaminated and Pristine Alpine Soils [DOI]
114. 114 Identification of Acinetobacter genomic species by amplified ribosomal DNA restriction analysis [DOI]
115. 115 Bacterial Succession in a Petroleum Land Treatment Unit [DOI]
116. 116 Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships. [DOI]
117. 117 A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization [DOI]
118. 118 Targeted metagenomics: a high‐resolution metagenomics approach for specific gene clusters in complex microbial communities [DOI]
119. 119 Bacterial Communities from Shoreline Environments (Costa da Morte, Northwestern Spain) Affected by the Prestige Oil Spill [DOI]
120. 120 Central Role of Dynamic Tidal Biofilms Dominated by Aerobic Hydrocarbonoclastic Bacteria and Diatoms in the Biodegradation of Hydrocarbons in Coastal Mudflats [DOI]
121. 121 Oligonucleotide Microarray for the Study of Functional Gene Diversity in the Nitrogen Cycle in the Environment [DOI]
122. 122 Phylogenetic Characterization of Microbial Communities That Reductively Dechlorinate TCE Based upon a Combination of Molecular Techniques [DOI]
123. 123 Molecular Characterization of Bacterial Populations in Petroleum-Contaminated Groundwater Discharged from Underground Crude Oil Storage Cavities [DOI]
124. 124 Activity and Diversity of Sulfate-Reducing Bacteria in a Petroleum Hydrocarbon-Contaminated Aquifer [DOI]
125. 125 Quantitative Detection of Microbial Genes by Using DNA Microarrays [DOI]
126. 126 Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples [DOI]
127. 127 Real-time reverse transcription PCR analysis of expression of atrazine catabolism genes in two bacterial strains isolated from soil [DOI]
128. 128 Molecular Characterization of a Dechlorinating Community Resulting from In Situ Biostimulation in a Trichloroethene-Contaminated Deep, Fractured Basalt Aquifer and Comparison to a Derivative Laboratory Culture [DOI]
129. 129 Development of a Universal Microarray Based on the Ligation Detection Reaction and 16S rRNA Gene Polymorphism To Target Diversity of Cyanobacteria [DOI]
130. 130 Direct Profiling of Environmental Microbial Populations by Thermal Dissociation Analysis of Native rRNAs Hybridized to Oligonucleotide Microarrays [DOI]
131. 131 Composition and Diversity of Microbial Communities Recovered from Surrogate Minerals Incubated in an Acidic Uranium-Contaminated Aquifer [DOI]
132. 132 Development and Testing of a DNA Macroarray To Assess Nitrogenase ( nifH ) Gene Diversity [DOI]
133. 133 Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1 [DOI]
134. 134 Nature of Polymorphisms in 16S-23S rRNA Gene Intergenic Transcribed Spacer Fingerprinting of Bacillus and Related Genera [DOI]
135. 135 Comparison of the Specificities and Efficacies of Primers for Aromatic Dioxygenase Gene Analysis of Environmental Samples [DOI]
136. 136 Comparative analysis of polychlorinated biphenyl‐dechlorinating communities in enrichment cultures using three different molecular screening techniques [DOI]
137. 137 Assessment of polycyclic aromatic hydrocarbon biodegradation potential in mangrove sediment from Don Hoi Lot, Samut Songkram Province, Thailand [DOI]
138. 138 Characterization of hydrocarbon utilizing bacteria in tropical marine sediments [DOI]
139. 139 Accessing the Black Box of Microbial Diversity and Ecophysiology: Recent Advances Through Polyphasic Experiments [DOI]
140. 140 Petroleum biotechnology: Technology trends for the future [DOI]
141. 141 Identification of Staphylococcus species by 16S-23S rDNA intergenic spacer PCR analysis [DOI]
142. 142 Estimation of Bacterial Cell Numbers in Humic Acid-Rich Salt Marsh Sediments with Probes Directed to 16S Ribosomal DNA [DOI]
143. 143 Alcanivorax hongdengensis sp. nov., an alkane-degrading bacterium isolated from surface seawater of the straits of Malacca and Singapore, producing a lipopeptide as its biosurfactant [DOI]
144. 144 Degradation of the“Erika”oil [DOI]
145. 145 Enhancement of recovery of residual oil using a biosurfactant slug
146. 146 Suspension Array Analysis of 16S rRNA from Fe- and SO 4 2 -Reducing Bacteria in Uranium-Contaminated Sediments Undergoing Bioremediation [DOI]
147. 147 Dynamics of indigenous bacterial communities associated with crude oil degradation in soil microcosms during nutrient-enhanced bioremediation [DOI]
148. 148 Attenuation of oil pollutants in the Arabian Gulf water by bacteria naturally associated with live fish [DOI]
149. 149 Phylogenetic diversity of dominant bacterial communities during bioremediation of crude oil-polluted soil [DOI]
150. 150 Molecular phylogenetic analysis ofVibrio cholerae O1 El Tor strains isolated before, during and after the O139 outbreak based on the intergenomic heterogeneity of the 16S-23S rRNA intergenic spacer regions [DOI]
151. 151 Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale [DOI]
152. 152 Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes [DOI]
153. 153 PCR primers to amplify 16S rRNA genes from cyanobacteria [DOI]
154. 154 Methods of studying soil microbial diversity [DOI]
155. 155 Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community [DOI]
156. 156 Metagenomic Analyses: Past and Future Trends [DOI]
157. 157 Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment [DOI]
158. 158 Detection of Genes Involved in Biodegradation and Biotransformation in Microbial Communities by Using 50-Mer Oligonucleotide Microarrays [DOI]
159. 159 Microarray-Based Analysis of Subnanogram Quantities of Microbial Community DNAs by Using Whole-Community Genome Amplification [DOI]
160. 160 A survey of the methods for the characterization of microbial consortia and communities [DOI]
161. 161 Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays [DOI]
162. 162 Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts? [DOI]
163. 163 The Isotope Array, a New Tool That Employs Substrate-Mediated Labeling of rRNA for Determination of Microbial Community Structure and Function [DOI]
164. 164 Application of Sequence-Specific Labeled 16S rRNA Gene Oligonucleotide Probes for Genetic Profiling of Cyanobacterial Abundance and Diversity by Array Hybridization [DOI]
165. 165 Analysis of Bacterial Communities in Soil by Use of Denaturing Gradient Gel Electrophoresis and Clone Libraries, as Influenced by Different Reverse Primers [DOI]
166. 166 Direct Extraction of DNA from Soils for Studies in Microbial Ecology [DOI]
167. 167 Microbial consortia in mesocosm bioremediation trial using oil sorbents, slow-release fertilizer and bioaugmentation [DOI]
168. 168 Assessment of microbial community structure changes by amplified ribosomal DNA restriction analysis (ARDRA).
169. 169 Community analysis of nitrifying bacteria in an advanced and compact Gappei-Johkasou by FISH and PCR-DGGE [DOI]
170. 170 Analysis of 16S-23S rRNA Intergenic Spacer of Vibrio cholerae and Vibrio mimicus for Detection of These Species [DOI]
171. 171 Population Diversity ofStaphylococcus intermediusIsolates from Various Host Species: Typing by 16S-23S Intergenic Ribosomal DNA Spacer Polymorphism Analysis [DOI]
172. 172 Real time quantitative PCR. [DOI]

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